Physics-informed categorization of data modalities used in AI-assisted drug discoveryLeili Zhang2025ACS Spring 2025
Learning coarse-grained force fields for fibrogenesis modelingZiji ZhangGeorgios Kementzidiset al.2024Computer Physics Communications
Unsupervised and supervised AI on molecular dynamics simulations reveals complex characteristics of HLA-A2-peptide immunogenicityJeffrey K WeberJoseph A Morroneet al.2024Briefings in Bioinformatics
r-BRICS – A Revised BRICS Module That Breaks Ring Structures and Carbon ChainsLeili ZhangVasumitra Raoet al.2023ChemMedChem
Molecular dynamics as a data source: scaling simulation for building AI modelsJoseph MorroneJeff Weberet al.2023ACS Fall 2023
Folding and misfolding of Huntingtin protein from a coevolutionary perspectiveLeili Zhang2023ACS Fall 2023
Graph-based 3D Generative Small-Molecule Modeling Targeting for Multi Proteins with Enhanced Binding CompatibilitySeung Gu KangJeff Weberet al.2023ACS Fall 2023
AI-aided multiscale modeling of physiologically-significant blood clotsYicong ZhuChangnian Hanet al.2023Computer Physics Communications
CASTELO — a combined machine learning and molecular modeling for drug discovery and protein-protein interaction optimizationLeili Zhang2022ACS Fall 2022