Leveraging Large Language Models to Predict Antibody Biological Activity Against Influenza A Hemagglutinin
- Ella Barkan
- Ibrahim Siddiqui
- et al.
- 2025
- Computational And Structural Biotechnology Journal
Publications
31 results for Jeff Weber
Unsupervised and supervised AI on molecular dynamics simulations reveals complex characteristics of HLA-A2-peptide immunogenicity
- 2024
- Briefings in Bioinformatics
Combining molecular simulation and AI for antibody design against cancer immunotherapy targets
- 2023
- ACS Fall 2023
Molecular dynamics as a data source: scaling simulation for building AI models
- Joseph Morrone
- Jeff Weber
- et al.
- 2023
- ACS Fall 2023
Graph-based 3D Generative Small-Molecule Modeling Targeting for Multi Proteins with Enhanced Binding Compatibility
- Seung Gu Kang
- Jeff Weber
- et al.
- 2023
- ACS Fall 2023
Molecular basis of differential HLA class I-restricted T cell recognition of a highly networked HIV peptide
- Xiaolong Li
- Nishant Kumar Singh
- et al.
- 2023
- Nature Communications
Predicting HLA-peptide complex immunogenicity with molecular dynamics and graph convolutional deep learning
- 2022
- ACS Fall 2022
In-Pocket 3D Graphs Enhance Ligand-Target Compatibility in Generative Small-Molecule Creation
- Seung Gu Kang
- Jeff Weber
- et al.
- 2022
- arXiv
Analysis of Training and Seed Bias in Small Molecules Generated with a Conditional Graph-Based Variational Autoencoder─Insights for Practical AI-Driven Molecule Generation
- Seung-Gu Kang
- Joseph A. Morrone
- et al.
- 2022
- J. Chem. Inf. Model.
Simplified, interpretable graph convolutional neural networks for small molecule activity prediction
- 2021
- J. Comput. Aided Mol. Des.