Combining physics-based modeling and graph neural networks for drug discoveryJoseph Morrone2022ACS Fall 2022
Self-Focusing Virtual Screening with Active Design Space PruningDavid E. GraffMatteo Aldeghiet al.2022J. Chem. Inf. Model.
In-Pocket 3D Graphs Enhance Ligand-Target Compatibility in Generative Small-Molecule CreationSeung Gu KangJeff Weberet al.2022arXiv
Analysis of Training and Seed Bias in Small Molecules Generated with a Conditional Graph-Based Variational Autoencoder─Insights for Practical AI-Driven Molecule GenerationSeung-Gu KangJoseph A. Morroneet al.2022J. Chem. Inf. Model.
Simplified, interpretable graph convolutional neural networks for small molecule activity predictionJeffrey K. WeberJoseph A. Morroneet al.2021J. Comput. Aided Mol. Des.
Combining docking pose rank and structure with deep learning improves protein−ligand binding mode prediction over a baseline docking approachJoseph A. MorroneJeffrey K. Weberet al.2020J. Chem. Inf. Model.
Binding Specificity Determines the Cytochrome P450 3A4 Mediated Enantioselective Metabolism of MetconazoleShulin ZhuangLeili Zhanget al.2018Journal of Physical Chemistry B
Thickness dependent semiconductor-to-metal transition of two-dimensional polyaniline with unique work functionsWeifeng LiXing Daiet al.2017Nanoscale
Accelerating physical simulations of proteins by leveraging external knowledgeAlberto PerezJoseph A. Morroneet al.2017WIREs Computational Molecular Science
Molecular Simulations Identify Binding Poses and Approximate Affinities of Stapled α-Helical Peptides to MDM2 and MDMXJoseph A. MorroneAlberto Perezet al.2017JCTC