LEOPARD: Linking Experimental Observations with Predictive Algorithms to reveal Response Dynamics for the single cellVibha AnandAkira Kosekiet al.2025ISMB 2025
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell AnalysesJoao Bettencourt-SilvaNatasha Mulliganet al.2025ISMB 2025
Are Large Language Models Effective in Clinical Trial Design? A Study on Baseline Feature GenerationNafis NeehalBowen Wanget al.2025NAACL 2025
Investigating the impact of steroid dependence on gastrointestinal surgical outcomes from UK BiobankUri KartounAkira Kosekiet al.2024Scientific Reports
Design and Assessment of Representative Hybrid Clinical Trials using Health Recommender SystemNafis NeehalVibha Anandet al.2024RecSys 2024
Improving Health-Status Classification for Epithelial Cells of Inflammatory Bowel Disease using a Transcriptomic Biomedical Foundation ModelToshiya IwamoriVibha Anandet al.2024ISMB 2024
Cross Dataset Verification of Cell Type Annotation using a Transcriptomic Biomedical Foundation Model: Inflammatory Bowel Disease Use CaseAkihiro KosugiVibha Anandet al.2024ISMB 2024
Identifying Putative Gene Markers: A Biomedical Foundation Model-based Approach for Cell Type AnnotationUri KartounAkira Kosekiet al.2024ISMB 2024
Contextualizing Single-Cell Analyses: An AI Pipeline for Evidence Search from Literature and Gene DatabasesJoao Bettencourt-SilvaNatasha Mulliganet al.2024ISMB 2024
Data-Driven Phenotyping of Presymptomatic Type 1 Diabetes Using Longitudinal Autoantibody ProfilesMohamed GhalwashVibha Anandet al.2024Diabetes Care