GENET: AI-Powered Interactive Visualization Workflows to Explore Biomedical Entity NetworksBc KwonNatasha Mulliganet al.2025ISMB 2025
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision MedicineChing-Huei TsouMichal Ozery-Flatoet al.2025ISMB 2025
Improving Health-Status Classification for Epithelial Cells of Inflammatory Bowel Disease using a Transcriptomic Biomedical Foundation ModelToshiya IwamoriVibha Anandet al.2024ISMB 2024
Cross Dataset Verification of Cell Type Annotation using a Transcriptomic Biomedical Foundation Model: Inflammatory Bowel Disease Use CaseAkihiro KosugiVibha Anandet al.2024ISMB 2024
Capturing Individual-level Social Determinants from Clinical TextJennifer J. LiangDiwakar Mahajanet al.2023AMIA Annual Symposium 2023
Hierarchy-aware Adverse Reaction Embeddings for Signal DetectionVenkata Naga Sreeram JoopudiBharath Dandalaet al.2022AMIA Annual Symposium 2022
Reducing Physicians’ Cognitive Load During Chart Review: A Problem-Oriented Summary of the Patient Electronic RecordJennifer J. LiangChing-Huei Tsouet al.2021AMIA Annual Symposium 2021
Toward Understanding Clinical Context of Medication Change Events in Clinical NarrativesDiwakar MahajanJennifer J. Lianget al.2021AMIA Annual Symposium 2021
Evaluating Social Determinants of Health in Clinical Communications DataDiwakar MahajanJennifer J. Lianget al.2021AMIA Annual Symposium 2021
AI-assisted tracking of worldwide non-pharmaceutical interventions for COVID-19Partha SuryanarayananChing-Huei Tsouet al.2021Nature