Using Agentic AI systems to harness multi-omics foundation models for accelerating biomedical discovery
- 2025
- AI x Bio 2025
Publications
21 results for Anna Paola Carrieri
AutoXAI4Omics: an automated explainable AI tool for omics and tabular data
- James Strudwick
- Laura-Jayne Gardiner
- et al.
- 2024
- Briefings in Bioinformatics
Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production
- Kristen L. Beck
- Niina Haiminen
- et al.
- 2024
- mSystems
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
- Justin P. Shaffer
- Louis-Félix Nothias
- et al.
- 2022
- Nature Microbiology
Combining explainable machine learning, demographic and multi-omic data to inform precision medicine strategies for inflammatory bowel disease
- 2022
- PLoS ONE
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
- George Armstrong
- Kalen Cantrell
- et al.
- 2021
- Genome Research
Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function
- Laura Gardiner
- Rachel Rusholme-Pilcher
- et al.
- 2021
- PNAS
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
- Clarisse Marotz
- Pedro Belda-Ferre
- et al.
- 2021
- Microbiome
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data
- Lingjing Jiang
- Niina Haiminen
- et al.
- 2021
- Biometrics
Challenges in benchmarking metagenomic profilers
- Zheng Sun
- Shi Huang
- et al.
- 2021
- Nature Methods