Toward a Coherent Virtual Cell Model: Probing Biological World-Model Coherence in Transcriptomic Foundation Models
- Noa Moriel
- Yishai Shimoni
- et al.
- 2025
- NeurIPS 2025
Workshop paper
Publications
8 results for Yishai Shimoni
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- Noa Moriel
- Michael Morris Danziger
- et al.
- 2025
- ISMB 2025
PosterDOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIES
- Yoav Kan-Tor
- Michael Morris Danziger
- et al.
- 2025
- ISMB 2025
PosterImproving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive Masking
- Michael Morris Danziger
- Bharath Dandala
- et al.
- 2025
- ISMB 2025
PosterPropensity score models are better when post-calibrated
- Rom Gutman
- Ehud Karavani
- et al.
- 2022
- arXiv
PaperA causal inference approach for estimating effects of non-pharmaceutical interventions
- Vesna Resende Barros
- Itay Manes
- et al.
- 2022
- PLoS ONE
PaperAn Evaluation Toolkit to Guide Model Selection and Cohort Definition in Causal Inference
- Yishai Shimoni
- Ehud Karavani
- et al.
- 2019
- arXiv
PaperBenchmarking Framework for Performance-Evaluation of Causal Inference Analysis
- Yishai Shimoni
- Chen Yanover
- et al.
- 2018
- arXiv
Paper