Toward a Coherent Virtual Cell Model: Probing Biological World-Model Coherence in Transcriptomic Foundation ModelsNoa MorielYishai Shimoniet al.2025NeurIPS 2025
Enhancing Study-Level Inference from Clinical Trial Papers via Reinforcement Learning-Based Numeric ReasoningMassimiliano PronestiMichela Lorandiet al.2025EMNLP 2025
Phrase-grounded Fact-checking for Automatically Generated Chest X-ray ReportsRazi MahmoodDiego Machado Reyeset al.2025MICCAI 2025
Triple activation of germinated seeds diversifies protein breakdownIndrani BeraRaúl Fernández Díazet al.2025ACS Fall 2025
How to generalize machine learning models to both canonical and non-canonical peptidesRaúl Fernández DíazRodrigo Ochoaet al.2025ACS Fall 2025
Drug-target binding affinity prediction with docking pose physicsMarina Villacampa-fernandezRaúl Fernández Díazet al.2025ACS Fall 2025
Query-driven Document-level Scientific Evidence Extraction from Biomedical StudiesMassimiliano PronestiJoao Bettencourt-Silvaet al.2025ACL 2025
AutoPeptideML 2: An open source library for democratizing machine learning for peptide bioactivity predictionRaúl Fernández DíazLam Thanh Hoanget al.2025ISMB 2025
GENET: AI-Powered Interactive Visualization Workflows to Explore Biomedical Entity NetworksBc KwonNatasha Mulliganet al.2025ISMB 2025
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision MedicineChing-Huei TsouMichal Ozery-Flatoet al.2025ISMB 2025