Assessing Chemical Foundation Models for Glycan Representation and TasksManuel RavasqueiraJoao Bettencourt-Silvaet al.2026ACS Spring 2026Poster
GENET: AI-Powered Interactive Visualization Workflows to Explore Biomedical Entity NetworksBc KwonNatasha Mulliganet al.2025ISMB 2025Talk
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell AnalysesJoao Bettencourt-SilvaNatasha Mulliganet al.2025ISMB 2025Poster
LEOPARD: Linking Experimental Observations with Predictive Algorithms to reveal Response Dynamics for the single cellVibha AnandAkira Kosekiet al.2025ISMB 2025Poster
Enhancing foundation models for scientific discovery via multimodal knowledge graph representationsVanessa LopezLam Thanh Hoanget al.2025Journal of Web SemanticsPaper
Evaluating the Predictive Features of Person-Centric Knowledge Graph Embeddings: Unfolding Ablation StudiesChristos TheodoropoulosNatasha Mulliganet al.2024MIE 2024Conference paper
Cross Dataset Verification of Cell Type Annotation using a Transcriptomic Biomedical Foundation Model: Inflammatory Bowel Disease Use CaseAkihiro KosugiVibha Anandet al.2024ISMB 2024Poster
Improving Health-Status Classification for Epithelial Cells of Inflammatory Bowel Disease using a Transcriptomic Biomedical Foundation ModelToshiya IwamoriVibha Anandet al.2024ISMB 2024Poster
Identifying Putative Gene Markers: A Biomedical Foundation Model-based Approach for Cell Type AnnotationUri KartounAkira Kosekiet al.2024ISMB 2024Poster
Contextualizing Single-Cell Analyses: An AI Pipeline for Evidence Search from Literature and Gene DatabasesJoao Bettencourt-SilvaNatasha Mulliganet al.2024ISMB 2024Poster