A new era of collaborative experimentation enabled by multi-cloud and AI foundation models
- Patrick Ruch
- Alain Vaucher
- et al.
- 2023
- Future Labs Live 2023
Conference paper
Publications
23 results for Marianna Rapsomaniki
Matching single cells across modalities with contrastive learning and optimal transport
- Federico Gossi
- Pushpak Pati
- et al.
- 2023
- Briefings in Bioinformatics
PaperChromFormer: A transformer-based model for 3D genome structure prediction
- Henry Valeyre
- Pushpak Pati
- et al.
- 2022
- NeurIPS 2022
Workshop paperA stochastic hybrid model for DNA replication incorporating protein mobility dynamics
- Jonas Windhager
- Amelia Paine
- et al.
- 2022
- bioRxiv
PaperscQUEST: Quantifying tumor ecosystem heterogeneity from mass or flow cytometry data
- Adriano Luca Martinelli
- Johanna Wagner
- et al.
- 2022
- STAR Protocols
PaperLearning a single-cell map of Acute Myeloid Leukaemia with auto-encoders
- Alice Driessen
- Susane Unger
- et al.
- 2022
- ISMB 2022
PosterQuantification of tumor heterogeneity: from data acquisition to metric generation
- Aditya Kashyap
- Maria Anna Rapsomaniki
- et al.
- 2022
- TIBTECH
ReviewATHENA: analysis of tumor heterogeneity from spatial omics measurements
- Adriano Luca Martinelli
- Maria Anna Rapsomaniki
- 2022
- Bioinformatics
PaperModeling the Three-Dimensional Chromatin Structure from Hi-C Data with Transfer Learning
- Tristan Meynier
- Marianna Rapsomaniki
- 2021
- NeurIPS 2021
Workshop paperSpatial protein heterogeneity analysis in frozen tissues to evaluate tumor heterogeneity
- Anna Fomitcheva Khartchenko
- Maria Anna Rapsomaniki
- et al.
- 2021
- PLoS ONE
Paper