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LL-COVID19

MICCAI 2021 workshop on Lessons Learned from the development and application
of medical imaging-based AI technologies for combating COVID-19

October 01, 2021

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  • Call for Papers
  • Program
  • Organizing Committee
  • Reviewers

David Beymer (IBM Research - Almaden), Organizer

Jannis Born (IBM Research - Zurich), Speaker

Orest B. Boyko (University of Southern California), Panelist

Gustavo Carneiro (University of Adelaide), Organizer

Compas Colin (NVIDIA), Speaker

Maria Gabrani (IBM Research - Zurich), Organizer

Gautam R. Gare (Carnegie Mellon University), Speaker

Bram van Ginneken (Radboud University Medical Center), Speaker

Michal Guindy (Assuta Medical Center), Organizer

Bishesh Khanal (NAAMII), Panelist

Ender Konukoglu (ETH-Zurich), Organizer

Yunfei Long (Huawei Technologies), Speaker

Anirban Mukhopadhyay (TU Darmstadt), Speaker

Itamar Offer (Sabar Health), Panelist

Michal Rosen-Zvi (IBM Research - Haifa), Organizer

Holger Roth (NVIDIA), Speaker

Dorith-Shaham (Hadassah Ein Kerem), Speaker

Ruud J.G. van Sloun (Eindhoven University of Technology), Speaker

Introduction

The global COVID-19 pandemic has accelerated the development of numerous digital technologies in medicine from telemedicine to remote monitoring. Concurrently, the pandemic has resulted in huge pressures on healthcare systems. Medical imaging from chest radiographs to computed tomography and ultrasound of the thorax have played an important role in the diagnosis and management of the coronavirus infection. The rise of artificial intelligence induced a quantum leap in medical image analysis and AI has proven equipollent to healthcare professionals in several diseases. The rapid reaction of the community to the threat of the coronavirus pandemic included numerous initiatives of development of AI technologies for interpreting lung imaging for COVID-19 across different modalities: CT, XRay and ultrasound imaging. This workshop is devoted to the lessons learned from this accelerated process.

In particular, we aim at bringing together radiologists and AI experts to review the scientific progress in the development of AI technologies for Medical Imaging to address the COVID-19 pandemic and share observations regarding the speed, geographical diversity and clinical relevancy of these developments. We aim at understanding if and what was done differently on this front of developing technologies of AI for lung images of COVID-19 patients, given the pressure of unprecedented pandemic - which process should be further adapted, and which approaches should be abundant.

The workshop is part of MICCAI 2021.

Program

In recent years, AI solutions have shown to be capable of assisting radiologists and clinicians in detecting diseases, assessing severity, automatically localizing and quantifying disease features or providing an automated assessment of disease prognosis. AI for medical imaging has received extraordinary attention in 2020. During the current COVID-19 pandemic, lung imaging took a key role in managing COVID-19 patients as well as complementing biomolecular testing methods. The need to save time, cost and lives accelerated the leverage of AI in medical imaging without though fully demonstrating its ability in remediating diseases such as COVID-19. This has been demonstrated by the huge increase in relevant publications.

UTC

CET

EDT

CST

 

09:00

11:00

05:00

17:00

Introduction


09:00


11:00


05:00


17:00


About the workshop,
Maria Gabrani

  • Bio

    Maria Gabrani is a Research Staff Member at IBM Research Zurich since 2001. Her research has focused on image processing and pattern recognition techniques, used to extract meaningful information from data in different application areas, from medical imaging to computational pathology. She is currently a manager of the Cognitive Healthcare and Lifesciences group that focuses on ingesting, analyzing and integrating textual, imaging and molecular data for building health knowledge and disease understanding and supporting decision making in numerous applications, from medical triage, to diagnosis, prognosis and treatment selection and treatment monitoring. She has also global IBM Research roles, as one of the strategists in Future of Health and specifically in the areas of oncology and knowledge representation, as well as a member of the Exploratory Lifesciences Council of IBM Research. Before joining IBM, from 1999 until 2001, Maria worked for Philips Research, in Eindhoven, The Netherlands. She holds a Ph.D and MS degree in Electrical and Computer Engineering from Drexel University, Philadelphia, PA, USA, and a Diploma in Electrical Engineering from Aristotle University, Thessaloniki Greece. She has received numerous awards including several Outstanding technical Achievement awards, from IBM Corporation, and Technical Achievement Award, from IBM Research Division and numerous best paper awards, from NASA/Goddard Space Flight Center, Image Registration Workshop (1997), to GRAIL best paper award, MICCAI (2020), and more than 40 patents.


09:05


11:05


05:05


17:05


Analysis of the role of AI applied to medical images of the chest in COVID-19,
Jannis Born

  • Bio

    Jannis is a PhD student jointly between IBM Research Europe and the D-BSSE at ETH Zurich. His current research is on machine learning for healthcare applications, especially deep molecular generative models and medical image analysis. Jannis received a BSc. in Cognitive Science and a M.Sc. in Computational Neuroscience, both with highest distinction. He has worked and studied in Germany, Singapore, the UK and Switzerland and received the FXH Scientific Excellence Award from Roche for his work on cancer drug modelling in 2019.

09:30

11:30

05:30

17:30

Data definition
session chair: Gustavo Carneiro


09:30


11:30


05:30


17:30


DuCN: Dual-children Network for Medical Diagnosis and Similar Case Recommendation towards COVID-19,
Yunfei Long

  • Bio

    Dr.Yunfei Long is an algorithm engineer of Huawei. He obtained his PhD from Peking University. His research is at the intersection of medical imaging, fluorescence image and artificial intelligence aiming to build computational tools for improving the efficiency of the big health industry.


09:55


11:55


05:55


17:55


Why AI is not healthcare-ready: a case study in COVID-19,
Anirban Mukhopadhyay

  • Bio

    Dr. Anirban Mukhopadhyay leads a research group in TU Darmstadt, Germany that focuses on bringing imaging AI to benefit healthcare. Healthcare applications in the group includes diagnostic and interventional radiology, Pathology, image-guided surgery and robotic surgery. To bring in the view of different stakeholders within the healthcare AI domain, Dr. Mukhopadhyay hosts a Podcast called "AI-ready Healthcare." He tweets often about healthcare AI @anirbanakash.

10:20

12:20

06:20

18:20

Panel: Yunfei Long, Anirban Mukhopadhyay, Itamar Offer.
Moderator: Gustavo Carneiro

11:00

13:00

07:00

19:00

Lunch Break

12:00

14:00

08:00

20:00

Data availability
session chair: Ender Konukoglu


12:00


14:00


08:00


20:00


Leveraging Federated Learning to Overcome the Challenges of Developing AI for COVID-19,
Colin Compas

  • Bio

    Colin Compas leads the Healthcare Solutions Architect team for NVIDIA in the US. This team focuses on bringing deep learning and accelerated computing solutions to healthcare. His background is in medical image analysis where he has worked to develop automated methods for anomaly detection in clinical decision support. Prior to joining NVIDIA, Colin worked to bring cognitive solutions to radiologists and cardiologists as a part of IBM Research. Colin received his Ph.D. in biomedical engineering from Yale University focusing on quantification of cardiac function in echocardiography. His work has resulted in over 25 journal and conference publications.


12:25


14:25


08:25


20:25


Maximizing value from limited annotated data,
Ruud van Sloun

  • Bio

    Ruud JG van Sloun (Member, IEEE) received the B.Sc. and M.Sc. degrees (cum laude) in electrical engineering and the Ph.D. degree (cum laude) from the Eindhoven University of Technology, Eindhoven, The Netherlands, in 2012, 2014, and 2018, respectively. Since then, he has been an Assistant Professor with the Department of Electrical Engineering at the Eindhoven University of Technology and since January 2020 a Kickstart-AI fellow at Philips Research, Eindhoven. From 2019-2020 he was also a Visiting Professor with the Department of Mathematics and Computer Science at the Weizmann Institute of Science, Rehovot, Israel. He is an NWO Rubicon laureate and received a Google Faculty Research Award in 2020. His current research interests include artificial intelligence and deep learning for front-end (ultrasound) signal processing, model-based deep learning, compressed sensing, ultrasound imaging, and probabilistic signal and image analysis.

12:50

14:50

08:50

20:50

Panel: Colin Compas, Ruud van Sloun, Bishesh Khanal , Orest Boyko.
Moderator: Ender Konukoglu

13:30

15:30

09:30

21:30

Break

13:45

15:45

09:45

21:45

Translational research
session chair: Maria Gabrani


13:45


15:45


09:45


21:45


The Role of Pleura and Adipose in Lung Ultrasound AI,
Gautam Gare

  • Bio

    Gautam Rajendrakumar Gare is a first-year Ph.D. student at the Robotics Institute of Carnegie Mellon University (CMU), where his research area is Computer Vision and Deep Learning with a focus on AI-based video understanding targeting both natural and medical image domains. He received his Master's in Electrical and Computer Engineering from CMU in 2020 and completed his B.E. in Electronics and Communication Engineering from BMS College of Engineering, India.
    (Personal Website: https://ggare-cmu.github.io)


14:10


16:10


10:10


22:10


Collaborative AI Model Development in the Age of COVID,
Holger Roth

  • Bio

    Holger Roth is a Sr. Applied Research Scientist at NVIDIA focusing on deep learning for medical imaging. He has been working closely with clinicians and academics over the past several years to develop deep learning based medical image computing and computer-aided detection models for radiological applications. He is an Associate Editor for IEEE Transactions of Medical Imaging and holds a Ph.D. from University College London, UK. In 2018, he was awarded the MICCAI Young Scientist Publication Impact Award. (Website: https://research.nvidia.com/person/holger-roth)


14:35


16:35


10:35


22:35


COVID-19 on chest CT and chest x-rays: lessons learned and next steps,
Bram van Ginneken

  • Bio

    Bram van Ginneken is Professor of Medical Image Analysis at Radboud University Medical Center and chairs the Diagnostic Image Analysis Group. He also works for Fraunhofer MEVIS in Bremen, Germany, and is a founder of Thirona, a company that develops software and provides services for medical image analysis. He studied Physics at Eindhoven University of Technology and Utrecht University. In 2001, he obtained his PhD at the Image Sciences Institute on Computer-Aided Diagnosis in Chest Radiography. He has (co-)authored over 250 publications in international journals. He is member of the Editorial Board of Medical Image Analysis. He pioneered the concept of challenges in medical image analysis.


15:00


17:00


11:00


23:00


Imaging during the COVID-19 pandemic at the Hadassah Medical Center - How could AI assist?,
Dorith Shaham, co-author: Michael Bergel

  • Bio

    Prof. Dorith Shaham is the Director of CT and Cardiothoracic Imaging Unit at the Department of Medical Imaging, Hadassah Ein Kerem, Chair of the Clinical Teaching Committee at the Hebrew University-Hadassah School of Medicine and Deputy Editor of Journal of Thoracic Imaging.
    Prof. Shaham earned her MD from the Hebrew University-Hadassah School of Medicine in 1988 and completed her residency in Diagnostic Radiology at Hadassah in 1995. In 1997, Prof. Shaham completed a Clinical Fellowship in the Division of Thoracic Radiology at the New York Hospital, Cornell Medical Center, and in 2003 she returned for a research fellowship at the same institution.
    Upon her return to Israel and Hadassah in 1998, Prof. Shaham established the first Lung Cancer Screening Program in Israel at Hadassah, as a part of the International Early Lung Cancer Screening Program (I-ELCAP). She has studied the cost-effectiveness of low-dose CT-based lung cancer screening in Israel and participated in multiple I-ELCAP studies, investigating various aspects related to lung cancer screening.
    Prof. Shaham is a member of the steering committee appointed by the Israeli Ministry of Health in 2020, to establish a National Pilot Program for the Implementation of Lung Cancer Screening in Israel. As director of the Cardiothoracic Imaging Unit, she has been extensively involved with interpretation of images of COVID-19 patients since the beginning of the pandemic.

15:25

17:25

11:25

23:25

Panel: Michal Guindy, Gautam Gare, Holger Roth, Dorith Shaham, Bram van Ginneken.
Moderator: David Beymer

16:10

18:10

12:10

00:10

Wrap up


16:10


18:10


12:10


00:10


Michal Rosen-Zvi

  • Bio

    Dr. Rosen-Zvi is a Director of health informatics at IBM Research and a visiting professor at the Faculty of Medicine, The Hebrew University. At IBM Research she co-leads the research strategy of a worldwide team who are experts in AI applied to health data and she is the local senior manager of the IBM Research Haifa department who focuses on deep learning, machine learning and casual inference technologies applied to patients data. Michal holds a PhD in computational physics and completed postdoctoral studies at UC Berkeley, UC Irvine, and the Hebrew University in the area of Machine Learning. She joined IBM Research in 2005 and has since led various projects in the area of machine learning and healthcare. Michal has published more than 40 peer-reviewed papers and served as program committee in conferences such as AAAI, ICML and UAI and reviewer in journals such as Machine Learning and Nature. She serves at various boards and committees such as the Israeli national digital health committee and is elected to serve at the managing board of the Israeli Society of HealthTech.

16:15

18:15

12:15

00:15

Workshop ends

Call for workshop papers

You are invited to submit your full paper to the LL-COVID19 workshop in MICCAI 2021.

The MICCAI 2021 workshop on Lessons Learned from the development and application of medical imaging-based AI technologies for combating COVID-19 will be a virtual event and will be held as part of MICCAI 2021 on Oct 1, 2021.

The global COVID-19 pandemic has accelerated the development of numerous digital technologies in medicine from telemedicine to remote monitoring. Concurrently, the pandemic has resulted in huge pressures on healthcare systems. Medical imaging from chest radiographs to computed tomography and ultrasound of the thorax have played an important role in the diagnosis and management of the coronavirus infection. The rise of artificial intelligence induced a quantum leap in medical image analysis, and AI has proven equipollent to healthcare professionals in several diseases. The rapid reaction of the community to the threat of the coronavirus pandemic included numerous initiatives of development of AI technologies for interpreting lung imaging for COVID-19 across different modalities: CT, XRay and ultrasound imaging. This workshop is devoted to the lessons learned from this accelerated process. In particular, we aim at bringing together radiologists and AI experts to review the scientific progress in the development of AI technologies for Medical Imaging to address the COVID-19 pandemic and share observations regarding the speed, geographical diversity and clinical relevancy of these developments. We aim at understanding if and what was done differently on this front of developing technologies of AI for lung images of COVID-19 patients, given the pressure of unprecedented pandemic –which process should be further adapted or newly adopted, and which approaches should be abandoned.

    The workshop will include the following three sections:
  • Session 1:
    How to compensate for scarcity of data? Quickly achieving a comprehensive patient cohort for the development of AI technologies, how feasible and important is it in the early days of a pandemic and what are the alternatives that technology can offer?
  • Session 2:
    What is the role of different modalities? What AI technology on what lung imaging modality played the most important role in combatting COVID-19? What value can be gained from analysis of multi-modal data? In which modalities AI has the largest impact and why?
  • Session 3:
    Have we learned how to shorten the transition from incubation of AI technology to putting the technology to work at the clinic? What are the barriers we need to still resolve? How has AI assisted the clinical practice?
    We invite computational and clinical experts to submit one of three types of submissions:
  • An innovative technological solution
  • A Meta-analysis
  • A perspective

Papers will consist of a maximum of 7 pages (text, figures and tables) + up to 2 pages for references only. They should be submitted electronically in LNCS style, to the CMT system. Submission guidelines are similar to the MICCAI main conference. The submission should be blinded. Accepted papers will be published in the MICCAI Proceedings in the Springer LNCS Series. All workshop submissions must be original and cannot already be published or considered for publication elsewhere (with the explicit exception of arXiv.org as a form of prepublication of MICCAI contributions).

Looking forward to your submission,

Michal Rosen-Zvi
Maria Gabrani
Michal Guindy
David Beymer
Ender Konukoglu
Gustavo Carneiro

Organizing Committee

Michal Rosen-Zvi, Director for Health Informatics at IBM Research and a visiting Professor at the Faculty of Medicine, The Hebrew University, Israel.

  • Bio

    Dr. Rosen-Zvi is a Director of health informatics at IBM Research and a visiting professor at the Faculty of Medicine, The Hebrew University. At IBM Research she co-leads the research strategy of a worldwide team who are experts in AI applied to health data and she is the local senior manager of the IBM Research Haifa department who focuses on deep learning, machine learning and casual inference technologies applied to patients data. Michal holds a PhD in computational physics and completed postdoctoral studies at UC Berkeley, UC Irvine, and the Hebrew University in the area of Machine Learning. She joined IBM Research in 2005 and has since led various projects in the area of machine learning and healthcare. Michal has published more than 40 peer-reviewed papers and served as program committee in conferences such as AAAI, ICML and UAI and reviewer in journals such as Machine Learning and Nature. She serves at various boards and committees such as the Israeli national digital health committee and is elected to serve at the managing board of the Israeli Society of HealthTech.

Maria Gabrani, Manager, Cognitive Healthcare and Lifesciences, IBM Research - Zurich, Switzerland.

  • Bio

    Maria Gabrani is a Research Staff Member at IBM Research Zurich since 2001. Her research has focused on image processing and pattern recognition techniques, used to extract meaningful information from data in different application areas, from medical imaging to computational pathology. She is currently a manager of the Cognitive Healthcare and Lifesciences group that focuses on ingesting, analyzing and integrating textual, imaging and molecular data for building health knowledge and disease understanding and supporting decision making in numerous applications, from medical triage, to diagnosis, prognosis and treatment selection and treatment monitoring. She has also global IBM Research roles, as one of the strategists in Future of Health and specifically in the areas of oncology and knowledge representation, as well as a member of the Exploratory Lifesciences Council of IBM Research. Before joining IBM, from 1999 until 2001, Maria worked for Philips Research, in Eindhoven, The Netherlands. She holds a Ph.D and MS degree in Electrical and Computer Engineering from Drexel University, Philadelphia, PA, USA, and a Diploma in Electrical Engineering from Aristotle University, Thessaloniki Greece. She has received numerous awards including several Outstanding technical Achievement awards, from IBM Corporation, and Technical Achievement Award, from IBM Research Division and numerous best paper awards, from NASA/Goddard Space Flight Center, Image Registration Workshop (1997), to GRAIL best paper award, MICCAI (2020), and more than 40 patents.

Michal Guindy, MD, MPA, Head of ventures and innovation division and Chief Radiologist, Assuta Medical Center, Israel.

  • Bio

    Dr. Michal Guindy, MD, MPA, received her MD from Ben-Gurion University, and specialized in Radiology in Flinders, Australia and Israel. She received her MPA from Harvard Kennedy School.
    Dr. Guindy is the Head of Ventures and Innovation at Assuta Medical Centers and is also Head of Imaging, a department that produces over 600,000 studies annually. In addition, Dr. Guindy is member of the board of Patho-Lab Diagnostics.
    Dr. Guindy conducts research initiatives in the field of radiology, pathology, AI and ML. She is involved in medical education as a faculty member of Ben-Gurion University Medical School.
    Dr. Guindy held several managerial positions at Maccabi Healthcare Services (HMO), including Risk Management & Patient Safety, laboratory, imaging telemedicine services and medical director.

David Beymer, PhD, Research Manager - Medical Imaging Solutions, IBM Research - Almaden, USA.

  • Bio

    David Beymer is a Research Staff Member and a project manager in the AI and Cognitive Software group at the IBM Almaden Research Center in San Jose, California. He earned a Ph.D. in computer science from MIT in 1995, working on automated techniques for face recognition. Since completing his Ph.D., he has studied vehicle tracking, face tracking, person tracking, eye gaze tracking, and eye gaze analytics the University of California at Berkeley, SRI International, and IBM Research. While at the IBM Almaden Lab, he helped co-develop the AALIM clinical decision support system, the Clinical Data Hub patient cohort search tool aimed at clinical researchers, and the Medical Sieve cognitive assistant for radiologists. He most recently worked on medical imaging analytics in CT images for disease detection and clinical decision support in the healthcare industry, teaming with Watson Health Imaging on products like Clinical Review and Patient Synopsis. He has co-authored over 70 research articles in computer vision and medical informatics conferences and journals, and has 14 granted patents for his work at MIT and IBM.

Gustavo Carneiro, Professor of the School of Computer Science at the University of Adelaide, ARC Future Fellow, and the Director of Medical Machine Learning at the Australian Institute of Machine Learning, Australia.

  • Bio

    Gustavo Carneiro is a Professor of the School of Computer Science at the University of Adelaide, ARC Future Fellow, and the Director of Medical Machine Learning at the Australian Institute of Machine Learning. He joined the University of Adelaide as a senior lecturer in 2011, has become an associate professor in 2015 and a professor in 2019. In 2014 and 2019, he joined the Technical University of Munich as a visiting professor and a Humboldt fellow. From 2008 to 2011 Dr. Carneiro was a Marie Curie IIF fellow and a visiting assistant professor at the Instituto Superior Tecnico (Lisbon, Portugal) within the Carnegie Mellon University-Portugal program (CMU-Portugal). From 2006 to 2008, Dr. Carneiro was a research scientist at Siemens Corporate Research in Princeton, USA. In 2005, he was a post-doctoral fellow at the the University of British Columbia and at the University of California San Diego. Dr. Carneiro received his Ph.D. in computer science from the University of Toronto in 2004.
    His main research interest are in the fields of computer vision, medical image analysis and machine learning.

Ender Konukoglu, Assistant Professor of Biomedical Image Computing at ETH-Zurich, Switzerland.

  • Bio

    Ender Konukoglu did his B.S. and M.S. degrees at Bogazici University / Electrical and Electronics Engineering Department in 2003 and 2005. He got his PhD from University of Nice Sophia Antipolis working at INRIA Sophia Antipolis Mediterranean under the supervision of Prof. Nicholas Ayache in 2009.
    After the PhD Ender worked as a post-doctoral researcher at Microsoft Research in Cambridge between 2009 and 2012. Between 2012 and 2016 he worked at Athinoula A. Martinos Center for Biomedical Imaging and Harvard Medical School as an Instructor in Radiology and Assistant in Neuroscience. He was a member of the Laboratory for Computational Neuroimaging.
    In August 2016 Ender started as an Assistant Professor (tenure-track) of Biomedical Image Computing at ETH-Zurich.

Reviewers (list incomplete)

  • David Beymer, IBM Research, USA
  • Jannis Born, IBM Research, CH
  • Nathaniel Braman, Machine Learning/Computer Vision, Tempus Labs, USA
  • Colin Campas, Healthcare, NVIDIA, USA
  • Ehsan Dehghan, IBM Research, USA
  • Davide Fontanarosa, Faculty of Health, School of Clinical Sciences, Queensland University of Technology, AU
  • Maria Gabrani, IBM Research, CH
  • Ender Konukoglu, Assistant Professor of Biomedical Image Computing at ETH-Zurich, CH
  • Fengbei Liu, Australian Institute for Machine Learning, Univesrity of Adelaide, AU
  • Henning Mueller, Institute of Information Systems, HES-SO, Wallais, CH
  • Anirban Mukhopadhyay, Interactive Graphics Systems Group, Technical University of Darmstadt, DE
  • Jacinto Nascimento, Signals and Image processing Group, Institute for Systems and Robotics, LISBOA, PT
  • Deepta Rajan, Machine Learning, PathAI, USA
  • Michal Rosen-Zvi, IBM Research, IL

Registration

Please register to MICCAI SATELLITE EVENTS
in order to attend the LL-COVID19 workshop.

Important Dates

Circulation of call for papers: June 02, 2021
Paper submissions due: June 30, 2021 (extended)
Notification of paper decisions: July 16, 2021
Camera ready paper due: July 30, 2021
Workshop proceedings due: August 06, 2021
Workshop date: October 01, 2021

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